BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034A10LP1|AL429843
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1013 538 e-153
>3x_Contig1013
Length = 5070
Score = 538 bits (271), Expect = e-153
Identities = 300/305 (98%), Gaps = 4/305 (1%)
Strand = Plus / Minus
Query: 558 tcgccgtgtaaaggcgacgtcgtgaaccactagaccattggacctgcgacaacttgttgt 617
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5070 tcgccgtgtaa-ggcgacgtcgtgaaccactagaccattggacctgcgacaacttgttgt 5012
Query: 618 ggtgatgagtggaaaatgtccctaatatctactttaccgtgcatcaaagtgcttgttaca 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5011 ggtgatgagtggaaaatgtccctaatatctactttaccgtgcatcaaagtgcttgttaca 4952
Query: 678 atgtgattcccgagagg-aatcm-attgatatactcgaaagggccaaacatgaccaaaca 735
||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 4951 atgtgattcccgagagggaatcacattga-atactcgaaagggccaaacatgaccaaaca 4893
Query: 736 tcctctcatttgcagagtggatctgagcccaccaaaaggttgcggtgcgaggggacattc 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4892 tcctctcatttgcagagtggatctgagcccaccaaaaggttgcggtgcgaggggacattc 4833
Query: 796 cacaagaaaccggcaccatctcactctctctctctgtaccagttgcagttagaattgaaa 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 cacaagaaaccggcaccatctcactctctctctctgtaccagttgcagttagaattgaaa 4773
Query: 856 aattc 860
|||||
Sbjct: 4772 aattc 4768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7412
Number of Sequences: 1807
Number of extensions: 7412
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)